The HTML markup of your DD smooth menu has deviated from that of the original's, which most likely is the cause of the 2nd issue:
Code:
<div class='ddsmoothmenu' id='smoothmenu1'><div id="relative_div" style="position:relative;z-index:0"></div><ul class="level1"><li class="level1 item1 parent"><a class="level1 item1 parent" href="/cms/index.php/online-store?page=shop.browse&category_id=1" target="_self" title="Personal Care" ><span>Personal Care</span></a><ul class="level2"><li class="level2 item1"><a class="level2 item1 " href="/cms/index.php/online-store?page=shop.browse&category_id=6" target="_self" title="Foot Care" ><span>Foot Care</span></a></li><li class="level2 item2"><a class="level2 item2 " href="/cms/index.php/online-store?page=shop.browse&category_id=7" target="_self" title="Hair Care" ><span>Hair Care</span></a></li><li class="level2 item3"><a class="level2 item3 " href="/cms/index.php/online-store?page=shop.browse&category_id=8" target="_self" title="Oral Care" ><span>Oral Care</span></a></li><li class="level2 item4"><a class="level2 item4 " href="/cms/index.php/online-store?page=shop.browse&category_id=9" target="_self" title="Personal Care" ><span>Personal Care</span></a></li><li class="level2 item5"><a class="level2 item5 " href="/cms/index.php/online-store?page=shop.browse&category_id=18" target="_self" title="Skin Care" ><span>Skin Care</span></a></li></ul></li><li class="level1 item2 parent"><a class="level1 item2 parent" href="/cms/index.php/online-store?page=shop.browse&category_id=2" target="_self" title="Dietary Supplements" ><span>Dietary Supplements</span></a><ul class="level2"><li class="level2 item1"><a class="level2 item1 " href="/cms/index.php/online-store?page=shop.browse&category_id=19" target="_self" title="Minerals" ><span>Minerals</span></a></li><li class="level2 item2"><a class="level2 item2 " href="/cms/index.php/online-store?page=shop.browse&category_id=20" target="_self" title="Amino Acids" ><span>Amino Acids</span></a></li><li class="level2 item3"><a class="level2 item3 " href="/cms/index.php/online-store?page=shop.browse&category_id=21" target="_self" title="Herbs" ><span>Herbs</span></a></li><li class="level2 item4"><a class="level2 item4 " href="/cms/index.php/online-store?page=shop.browse&category_id=22" target="_self" title="Enzymes" ><span>Enzymes</span></a></li><li class="level2 item5"><a class="level2 item5 " href="/cms/index.php/online-store?page=shop.browse&category_id=23" target="_self" title="Oils" ><span>Oils</span></a></li></ul></li><li class="level1 item3"><a class="level1 item3 " href="/cms/index.php/online-store?page=shop.browse&category_id=3" target="_self" title="Books" ><span>Books</span></a></li><li class="level1 item4"><a class="level1 item4 " href="/cms/index.php/online-store?page=shop.browse&category_id=4" target="_self" title="Pantry" ><span>Pantry</span></a></li><li class="level1 item5"><a class="level1 item5 " href="/cms/index.php/online-store?page=shop.browse&category_id=5" target="_self" title="Garden" ><span>Garden</span></a></li></ul></div>
The part that concerns me more is the added DIV tag in red below, while the extra span tags may or may not be an issue. Compare your markup to the original as far as structure:
Code:
<div id="smoothmenu1" class="ddsmoothmenu">
<ul>
<li><a href="http://www.dynamicdrive.com">Item 1</a></li>
<li><a href="#">Folder 0</a>
<ul>
<li><a href="#">Sub Item 1.1</a></li>
<li><a href="#">Sub Item 1.2</a></li>
<li><a href="#">Sub Item 1.3</a></li>
<li><a href="#">Sub Item 1.4</a></li>
<li><a href="#">Sub Item 1.2</a></li>
<li><a href="#">Sub Item 1.3</a></li>
<li><a href="#">Sub Item 1.4</a></li>
</ul>
</li>
<li><a href="#">Folder 1</a>
<ul>
<li><a href="#">Sub Item 1.1</a></li>
<li><a href="#">Sub Item 1.2</a></li>
<li><a href="#">Sub Item 1.3</a></li>
<li><a href="#">Sub Item 1.4</a></li>
<li><a href="#">Sub Item 1.2</a></li>
<li><a href="#">Sub Item 1.3</a></li>
<li><a href="#">Sub Item 1.4</a></li>
</ul>
</li>
<li><a href="#">Item 3</a></li>
<li><a href="#">Folder 2</a>
<ul>
<li><a href="#">Sub Item 2.1</a></li>
<li><a href="#">Folder 2.1</a>
<ul>
<li><a href="#">Sub Item 2.1.1</a></li>
<li><a href="#">Sub Item 2.1.2</a></li>
<li><a href="#">Folder 3.1.1</a>
<ul>
<li><a href="#">Sub Item 3.1.1.1</a></li>
<li><a href="#">Sub Item 3.1.1.2</a></li>
<li><a href="#">Sub Item 3.1.1.3</a></li>
<li><a href="#">Sub Item 3.1.1.4</a></li>
<li><a href="#">Sub Item 3.1.1.5</a></li>
</ul>
</li>
<li><a href="#">Sub Item 2.1.4</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="http://www.dynamicdrive.com/style/">Item 4</a></li>
</ul>
<br style="clear: left" />
</div>
In other words, the original expected menu structure should just be a parent DIV with a nested UL in it, nothing more, nothing less. It shouldn't be hard to recreate the exact menu look you have on your page now without making all the changes you've made to the menu structure- if you want for me to take a stab at it, please post all the images of the menu involved (ie: background image, bullet etc) in the post below first.
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