Why not just specific an absolute URL to the .js file on your server inside the code in the HEAD section of your page, for example:
Code:
<script type="text/javascript" src="http://mysite.com/themes/ddtabmenu.js">
/***********************************************
* DD Tab Menu script- © Dynamic Drive DHTML code library (www.dynamicdrive.com)
* This notice MUST stay intact for legal use
* Visit Dynamic Drive at http://www.dynamicdrive.com/ for full source code
***********************************************/
</script>
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