There are certain things that need to be unique about each scroller instance. Sounds like you've missed one or more of these in your two new pausescroller declarations. For example, if they both use the same array, it will get messed up, only one scroller should control a given array. If you want both scrollers to use the same array, you either need to copy it with javascript to a different array, or make up two identical arrays with two different names. Most of these items that need to be unique to each scroller are either spelled out specifically on the demo page, or demonstrated by way of example in the two demo scrollers.
If you want more help:
Please post a link to the page on your site that contains the problematic code so we can check it out.
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